Is there any solution for this ? We work on a shared server, and sometimes I need to free gpu memory for other users without killing the whole kernel. Your code indeed frees the reserved memory (torch.cuda.memory_reserved() returns 0), but nvidia-smi still shows that my kernel is occupying the memory.
PS : I use jupyter-lab, that’s why sometimes I still need the kernel after that my model has finished training.
nvidia-smi will show the allocated memory by all processes. If you are only running PyTorch then the CUDA context would still use device memory (~1GB depending on the GPU etc.) and cannot be released without stopping the Python kernel.
Thank you for your reply. I am afraid that nvidia-smi shows all the GPU memory that is occupied by my notebook. For instance, if I train a model that needs 15 GB of GPU memory, and that I free the space using torch (by following the procedure in your code) , the torch.cuda.memory_reserved() will return 0, but nvidia-smi would still show 15GB.
nvidia-smi indeed shows all allocated memory, so if it’s still showing 15GB then some applications are still using it. If you are not seeing any memory usage (either allocated or in the cache) via torch.cuda.memory_summary(), another application (or python kernel) would use the device memory.
tensor = torch.ones((1,3,512,512))
print(torch.cuda.memory_allocated())
print(torch.cuda.memory_reserved())
tensor_cu = tensor.cuda()
print(torch.cuda.memory_allocated())
print(torch.cuda.memory_reserved())
another_tensor_cu = torch.ones((1,3,512,512)).cuda()
print(torch.cuda.memory_allocated())
print(torch.cuda.memory_reserved())
del tensor_cu
print(torch.cuda.memory_allocated())
print(torch.cuda.memory_reserved())
torch.cuda.empty_cache()
print(torch.cuda.memory_allocated())
print(torch.cuda.memory_reserved())
del another_tensor_cu
torch.cuda.empty_cache()
print(torch.cuda.memory_allocated())
print(torch.cuda.memory_reserved())
result:
0
0
3145728
20971520
6291456
20971520
3145728
20971520
3145728
20971520
0
0
conclusion:
you are corrent, and i want to supplement that deleting a single tensor from GPU does not affect other tensors.
Any solution here? Memory is not freed, see minimal example:
import os
os.environ["CUDA_VISIBLE_DEVICES"] = "6"
import torch
from transformers import LlamaForCausalLM
model = LlamaForCausalLM.from_pretrained(
pretrained_model_name_or_path='decapoda-research/llama-7b-hf',
load_in_8bit=True,
device_map={'': 0},
)
del model
torch.cuda.empty_cache()
print('breakpoint here - is memory freed?')
And here’s the solution:
import os
os.environ["CUDA_VISIBLE_DEVICES"] = "6"
import torch
from transformers import LlamaForCausalLM
model = LlamaForCausalLM.from_pretrained(
pretrained_model_name_or_path='decapoda-research/llama-7b-hf',
load_in_8bit=True,
device_map={'': 0},
)
del model
import gc
gc.collect()
torch.cuda.empty_cache()
print('breakpoint here - is memory freed?')
As soon as i load the model, the memory usage goes to 793MB, which I believe is memory occupied by CUDA context, as nothing is passed to the model at this stage. And also even if I delete the two models loaded (model and feature segmentor) and clear the cache with torch.cuda.empty_cache() to check the memory status, the memory usage stays the same 793MB.
Then at the next step, when I execute the following code:
with torch.no_grad():
model.eval()
avg_train_dice = []
for img in range(len(dataset_val)): # looping over all 3D files
train_samples, gt_samples, voxel = dataset_val[img] # Get the ith image, label, and voxel
stronger_predictions = []
predictions = []
for slice_id, img_slice in enumerate(train_samples): # looping over single img
img_slice = img_slice.unsqueeze(0)
img_slice = img_slice.to(device)
stronger_pred = model(img_slice)
stronger_pred = stronger_pred.detach().cpu()
stronger_predictions.append(stronger_pred.squeeze())
del img_slice
del stronger_pred
torch.cuda.empty_cache()
stronger_preds = torch.stack(stronger_predictions, dim= 0)
stronger_predictions.clear()
stronger_preds_prob = torch.sigmoid(stronger_preds)
if n_channels_out == 1:
train_dice = sdice(gt_samples.squeeze().numpy()>0,
stronger_preds_prob.numpy() > 0.5,
voxel[img])
else:
train_dice = dice_score(torch.argmax(stronger_preds_prob, dim=1) ,torch.argmax(gt_samples, dim=1), n_outputs=n_channels_out)
avg_train_dice.append(train_dice)
avg_train_dice = np.mean(avg_train_dice)
After this step completes, the memory usagreaches to 23723MB, but I was not calculating graidents in this step with torch.no_grad() specified, and deleted the tensors and cleared the cache too as can be seen in the code. I am not able to understand that why it is happening, since their is no gradient calculation, the data has been loaded and un loaded (confirmed by GPU utilization %), but still memory usage goes from the intial 793MB to 23723MB.
So, the memory is almost full and as soon as I go to my next step the following code:
for epoch in range(1, num_epochs + 1):
model.train()
train_loss_total = 0.0
num_steps = 0
for i, batch in enumerate(train_loader):
input_samples, gt_samples, _ = batch
var_input = input_samples.cuda(device)
try:
stronger_preds = model(var_input)
except:
embed()
if level == 0:
layer_activations = model.init_path(var_input)
preds = features_segmenter(layer_activations)
del var_input
# embed()
else: # level = 1
layer_activations_0 = model.init_path(var_input)
layer_activations_1 = model.down1(layer_activations_0)
logits_ = features_segmenter(layer_activations_1)
preds = F.interpolate(logits_, scale_factor=2, mode='bilinear')
if n_channels_out == 1:
stronger_preds_prob = torch.sigmoid(stronger_preds)
loss = weighted_cross_entropy_with_logits(preds, stronger_preds_prob)
# loss = weighted_cross_entropy_with_logits(preds, stronger_preds)
else:
# loss = -torch.mean(F.log_softmax(preds, dim=1)*F.softmax(stronger_preds, dim=1))
loss = CE_loss(preds, torch.argmax(stronger_preds, dim=1))
train_loss_total += loss.item()
optimizer.zero_grad()
loss.backward()
optimizer.step()
num_steps += 1
train_loss_total_avg = train_loss_total / num_steps
num_steps = 0
print('avg train loss', train_loss_total_avg)
The above code breaks after 1st iteration and generates the following error as no memory is left.
OutOfMemoryError: CUDA out of memory. Tried to allocate 512.00 MiB (GPU 0; 23.70 GiB total capacity; 21.92 GiB already allocated; 33.00 MiB free; 22.29 GiB reserved in total by PyTorch) If reserved memory is >> allocated memory try setting max_split_size_mb to avoid fragmentation. See documentation for Memory Management and PYTORCH_CUDA_ALLOC_CONF
Can you please help me with this?
That’s correct.
Could you post a minimal and executable code snippet reproducing the described observations?
Hi ptrblck,
The above simple tensor deletion seems fine to me however, when there is gets a little more complex, I found GPU memory are not released. The code follows.
import torch
import os
hidden_size = 1000
def print_cuda_mem():
print(f"allocated: {torch.cuda.memory_allocated() / 1e6}MB, max: {torch.cuda.max_memory_allocated() / 1e6}MB, reserved: {torch.cuda.memory_reserved() / 1e6}MB")
class Model(torch.nn.Module):
def __init__(self):
super().__init__()
self.linear = torch.nn.Linear(hidden_size, hidden_size)
def forward(self, x):
return self.linear(x)
def test_mem():
print_cuda_mem()
rand_input = torch.rand(hidden_size, hidden_size, device='cuda')
print_cuda_mem()
s1 = torch.cuda.memory_snapshot()
model = Model().cuda()
s2 = torch.cuda.memory_snapshot()
print_cuda_mem()
with torch.no_grad():
y = model(rand_input).sum().detach().cpu()
print(y)
s3 = torch.cuda.memory_snapshot()
print_cuda_mem()
del rand_input
del model
del y
s4 = torch.cuda.memory_snapshot()
torch.cuda.empty_cache()
import gc
gc.collect()
s5 = torch.cuda.memory_snapshot()
print_cuda_mem()
if __name__ == '__main__':
test_mem()
import gc
gc.collect()
s6 = torch.cuda.memory_snapshot()
print_cuda_mem()
An example output is
allocated: 0.0MB, max: 0.0MB, reserved: 0.0MB
allocated: 4.000256MB, max: 4.000256MB, reserved: 20.97152MB
allocated: 8.004608MB, max: 8.004608MB, reserved: 23.068672MB
tensor(7986.5176)
allocated: 16.97536MB, max: 22.024192MB, reserved: 23.068672MB
allocated: 8.970752MB, max: 22.024192MB, reserved: 20.97152MB
allocated: 8.970752MB, max: 22.024192MB, reserved: 20.97152MB
Even with manual gc and with torch.no_grad(), I found that there is still active memory usage (allocated: 8.970752MB) after s4 (s4, s5 and s6). I also looked deeper into the snapshot and confirmed that the active memory is created between s2 and s3, the model forwarding.
Any ideas and thanks! PyTorch version: 2.1.1+cu118