Hello,
I want to train a 3D network by using 3D images (.nii.gz format). So the first step, I use the nibabel lib to load 3d images in my dataloader class (see following codes).
import nibabel as nib
...
class Data(Dataset):
def __init__(...):
...
def __getitem__(self, idx):
image = nib.load(img_path)
label = nib.load(label_path)
image = torch.from_numpy(image).unsqueeze(0)
label = torch.from_numpy(label).unsqueeze(0)
return image, label
The I imported the Data class to load training sets in my model training script. However, magical bug have appeared. That is, I got ValueError: some of the strides of a given numpy array are negative. This is currently not supported, but will be added in future releases. The location where the bug appears is located to:
image = torch.from_numpy(image).unsqueeze(0)
This bug may appear when I first train and when I train some iterations, which means it doesn’t fix. My PyTorch version is 0.4.1. I am grateful for any suggestions.