Hello,
I am currently executing a job on a cluster, but it halts due to an inability to locate a specific module. The log indicates the following error:
Traceback (most recent call last):
File “/proj/users/xmal/RoseTTAFold2NA/network/predict.py”, line 8, in
from RoseTTAFoldModel import RoseTTAFoldModule
File “/proj/users/xmal/RoseTTAFold2NA/network/RoseTTAFoldModel.py”, line 3, in
from Embeddings import MSA_emb, Extra_emb, Templ_emb, Recycling
File “/proj/users/xmal/RoseTTAFold2NA/network/Embeddings.py”, line 7, in
from util_module import Dropout, get_clones, create_custom_forward, rbf, init_lecun_normal
File “/proj/users/xmal/RoseTTAFold2NA/networkutil_module.py”, line 7, in
import dgl
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/init.py”, line 16, in
from . import (
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/dataloading/init.py”, line 13, in
from .dataloader import *
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/dataloading/dataloader.py”, line 27, in
from …distributed import DistGraph
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/distributed/init.py”, line 5, in
from .dist_graph import DistGraph, DistGraphServer, edge_split, node_split
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/distributed/dist_graph.py”, line 11, in
from … import backend as F, graphbolt as gb, heterograph_index
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/graphbolt/init.py”, line 8, in
from .base import *
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/dgl/graphbolt/base.py”, line 8, in
from torchdata.datapipes.iter import IterDataPipe
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/torchdata/datapipes/init.py”, line 11, in
from . import iter, map, utils
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/torchdata/datapipes/iter/init.py”, line 79, in
from torchdata.datapipes.iter.util.cacheholder import (
File “/home/xmal/.conda/envs/RF2NA/lib/python3.10/site-packages/torchdata/datapipes/iter/util/cacheholder.py”, line 24, in
from torch.utils._import_utils import dill_available
ModuleNotFoundError: No module named ‘torch.utils._import_utils’
Version I have in my env
pytorch-cuda 11.7
pytorch-mutex 1.0
torch 2.1.2
torch-utils 0.1.2
torchaudio 2.2.2
torchdata 0.8.0
torchvision 0.17.2
Any help would be appreciated thanks!