Hi. I have an environment with specific configuration created by conda create en. The configuration is as:
channels:
- pytorch
- pyg
- nvidia
dependencies: - python=3.10
- pytorch=2.0.1
- torchvision=0.15.2
- pytorch-cuda=11.8
- pyg=2.3.1
- pytorch-cluster=1.6.1
- pip:
- lightning[pytorch-extra]==2.0.9
- numpy==1.26.0
- pillow==10.0.1
- scipy==1.11.3
- pandas==1.5.3
- matplotlib==3.8.0
- opencv-python==4.8.1.78
- pyvisgraph==0.2.1
- shapely==1.8.5.post1
- wandb==0.15.11
When creating the env, the conda list(in the env) shows me the package lists as:
packages in environment at /home/… /miniconda3/envs/…
Name Version Build Channel
_libgcc_mutex 0.1 main
_openmp_mutex 5.1 1_gnu
aiohttp 3.9.5 pypi_0 pypi
aiosignal 1.3.1 pypi_0 pypi
annotated-types 0.7.0 pypi_0 pypi
antlr4-python3-runtime 4.9.3 pypi_0 pypi
anyio 4.4.0 pypi_0 pypi
appdirs 1.4.4 pypi_0 pypi
arrow 1.3.0 pypi_0 pypi
async-timeout 4.0.3 pypi_0 pypi
attrs 23.2.0 pypi_0 pypi
backoff 2.2.1 pypi_0 pypi
beautifulsoup4 4.12.3 pypi_0 pypi
blas 1.0 mkl
blessed 1.20.0 pypi_0 pypi
boto3 1.34.140 pypi_0 pypi
botocore 1.34.140 pypi_0 pypi
brotli-python 1.0.9 py310h6a678d5_8
bzip2 1.0.8 h5eee18b_6
ca-certificates 2024.3.11 h06a4308_0
certifi 2024.6.2 py310h06a4308_0
charset-normalizer 2.0.4 pyhd3eb1b0_0
click 8.1.7 pypi_0 pypi
contourpy 1.2.1 pypi_0 pypi
croniter 1.4.1 pypi_0 pypi
cuda-cudart 11.8.89 0 nvidia
cuda-cupti 11.8.87 0 nvidia
cuda-libraries 11.8.0 0 nvidia
cuda-nvrtc 11.8.89 0 nvidia
cuda-nvtx 11.8.86 0 nvidia
cuda-runtime 11.8.0 0 nvidia
cuda-version 12.5 3 nvidia
cycler 0.12.1 pypi_0 pypi
dateutils 0.6.12 pypi_0 pypi
deepdiff 7.0.1 pypi_0 pypi
dnspython 2.6.1 pypi_0 pypi
docker-pycreds 0.4.0 pypi_0 pypi
docstring-parser 0.16 pypi_0 pypi
editor 1.6.6 pypi_0 pypi
email-validator 2.2.0 pypi_0 pypi
exceptiongroup 1.2.1 pypi_0 pypi
fastapi 0.111.0 pypi_0 pypi
fastapi-cli 0.0.4 pypi_0 pypi
ffmpeg 4.3 hf484d3e_0 pytorch
filelock 3.13.1 py310h06a4308_0
fonttools 4.53.1 pypi_0 pypi
freetype 2.12.1 h4a9f257_0
frozenlist 1.4.1 pypi_0 pypi
gitdb 4.0.11 pypi_0 pypi
gitpython 3.1.43 pypi_0 pypi
gmp 6.2.1 h295c915_3
gmpy2 2.1.2 py310heeb90bb_0
gnutls 3.6.15 he1e5248_0
h11 0.14.0 pypi_0 pypi
httpcore 1.0.5 pypi_0 pypi
httptools 0.6.1 pypi_0 pypi
httpx 0.27.0 pypi_0 pypi
hydra-core 1.3.2 pypi_0 pypi
idna 3.7 py310h06a4308_0
importlib-resources 6.4.0 pypi_0 pypi
inquirer 3.3.0 pypi_0 pypi
intel-openmp 2023.1.0 hdb19cb5_46306
itsdangerous 2.2.0 pypi_0 pypi
jinja2 3.1.4 py310h06a4308_0
jmespath 1.0.1 pypi_0 pypi
joblib 1.4.2 py310h06a4308_0
jpeg 9e h5eee18b_1
jsonargparse 4.24.1 pypi_0 pypi
kiwisolver 1.4.5 pypi_0 pypi
lame 3.100 h7b6447c_0
lcms2 2.12 h3be6417_0
ld_impl_linux-64 2.38 h1181459_1
lerc 3.0 h295c915_0
libcublas 11.11.3.6 0 nvidia
libcufft 10.9.0.58 0 nvidia
libcufile 1.10.0.4 0 nvidia
libcurand 10.3.6.39 0 nvidia
libcusolver 11.4.1.48 0 nvidia
libcusparse 11.7.5.86 0 nvidia
libdeflate 1.17 h5eee18b_1
libffi 3.4.4 h6a678d5_1
libgcc-ng 11.2.0 h1234567_1
libgfortran-ng 11.2.0 h00389a5_1
libgfortran5 11.2.0 h1234567_1
libgomp 11.2.0 h1234567_1
libiconv 1.16 h5eee18b_3
libidn2 2.3.4 h5eee18b_0
libnpp 11.8.0.86 0 nvidia
libnvjpeg 11.9.0.86 0 nvidia
libpng 1.6.39 h5eee18b_0
libstdcxx-ng 11.2.0 h1234567_1
libtasn1 4.19.0 h5eee18b_0
libtiff 4.5.1 h6a678d5_0
libunistring 0.9.10 h27cfd23_0
libuuid 1.41.5 h5eee18b_0
libwebp-base 1.3.2 h5eee18b_0
lightning 2.0.9 pypi_0 pypi
lightning-cloud 0.5.70 pypi_0 pypi
lightning-utilities 0.11.3.post0 pypi_0 pypi
lz4-c 1.9.4 h6a678d5_1
markdown-it-py 3.0.0 pypi_0 pypi
markupsafe 2.1.3 py310h5eee18b_0
matplotlib 3.8.0 pypi_0 pypi
mdurl 0.1.2 pypi_0 pypi
mkl 2023.1.0 h213fc3f_46344
mkl-service 2.4.0 py310h5eee18b_1
mkl_fft 1.3.8 py310h5eee18b_0
mkl_random 1.2.4 py310hdb19cb5_0
mpc 1.1.0 h10f8cd9_1
mpfr 4.0.2 hb69a4c5_1
mpmath 1.3.0 py310h06a4308_0
multidict 6.0.5 pypi_0 pypi
ncurses 6.4 h6a678d5_0
nettle 3.7.3 hbbd107a_1
networkx 3.3 py310h06a4308_0
numpy 1.26.0 pypi_0 pypi
omegaconf 2.3.0 pypi_0 pypi
opencv-python 4.8.1.78 pypi_0 pypi
openh264 2.1.1 h4ff587b_0
openjpeg 2.4.0 h9ca470c_1
openssl 3.0.14 h5eee18b_0
ordered-set 4.1.0 pypi_0 pypi
orjson 3.10.6 pypi_0 pypi
packaging 24.1 pypi_0 pypi
pandas 1.5.3 pypi_0 pypi
pathtools 0.1.2 pypi_0 pypi
pillow 10.0.1 pypi_0 pypi
pip 24.0 py310h06a4308_0
protobuf 4.25.3 pypi_0 pypi
psutil 5.9.0 py310h5eee18b_0
pybind11-abi 4 hd3eb1b0_1
pydantic 2.1.1 pypi_0 pypi
pydantic-core 2.4.0 pypi_0 pypi
pyg 2.3.1 py310_torch_2.0.0_cu118 pyg
pygments 2.18.0 pypi_0 pypi
pyjwt 2.8.0 pypi_0 pypi
pyparsing 3.0.9 py310h06a4308_0
pysocks 1.7.1 py310h06a4308_0
python 3.10.14 h955ad1f_1
python-dotenv 1.0.1 pypi_0 pypi
python-multipart 0.0.9 pypi_0 pypi
pytorch 2.0.1 py3.10_cuda11.8_cudnn8.7.0_0 pytorch
pytorch-cluster 1.6.1 py310_torch_2.0.0_cu118 pyg
pytorch-cuda 11.8 h7e8668a_5 pytorch
pytorch-lightning 2.3.2 pypi_0 pypi
pytorch-mutex 1.0 cuda pytorch
pytz 2024.1 pypi_0 pypi
pyyaml 6.0.1 pypi_0 pypi
readchar 4.1.0 pypi_0 pypi
readline 8.2 h5eee18b_0
requests 2.32.2 py310h06a4308_0
rich 13.7.1 pypi_0 pypi
runs 1.2.2 pypi_0 pypi
s3transfer 0.10.2 pypi_0 pypi
scikit-learn 1.4.2 py310h1128e8f_1
scipy 1.11.3 pypi_0 pypi
sentry-sdk 2.8.0 pypi_0 pypi
setproctitle 1.3.3 pypi_0 pypi
setuptools 69.5.1 py310h06a4308_0
shapely 1.8.5.post1 pypi_0 pypi
shellingham 1.5.4 pypi_0 pypi
six 1.16.0 pypi_0 pypi
smmap 5.0.1 pypi_0 pypi
sniffio 1.3.1 pypi_0 pypi
soupsieve 2.5 pypi_0 pypi
sqlite 3.45.3 h5eee18b_0
starlette 0.37.2 pypi_0 pypi
starsessions 1.3.0 pypi_0 pypi
sympy 1.12 py310h06a4308_0
tbb 2021.8.0 hdb19cb5_0
tensorboardx 2.6.2.2 pypi_0 pypi
threadpoolctl 3.5.0 py310h2f386ee_0
tk 8.6.14 h39e8969_0
torchmetrics 1.4.0.post0 pypi_0 pypi
torchtriton 2.0.0 py310 pytorch
torchvision 0.15.2 py310_cu118 pytorch
tqdm 4.66.4 py310h2f386ee_0
traitlets 5.14.3 pypi_0 pypi
typer 0.12.3 pypi_0 pypi
types-python-dateutil 2.9.0.20240316 pypi_0 pypi
typeshed-client 2.5.1 pypi_0 pypi
typing_extensions 4.11.0 py310h06a4308_0
tzdata 2024a h04d1e81_0
ujson 5.10.0 pypi_0 pypi
urllib3 2.2.2 py310h06a4308_0
uvicorn 0.30.1 pypi_0 pypi
uvloop 0.19.0 pypi_0 pypi
wandb 0.15.11 pypi_0 pypi
watchfiles 0.22.0 pypi_0 pypi
wcwidth 0.2.13 pypi_0 pypi
websocket-client 1.8.0 pypi_0 pypi
websockets 12.0 pypi_0 pypi
wheel 0.43.0 py310h06a4308_0
xmod 1.8.1 pypi_0 pypi
xz 5.4.6 h5eee18b_1
yarl 1.9.4 pypi_0 pypi
zlib 1.2.13 h5eee18b_1
zstd 1.5.5 hc292b87_2
When executing the code i have this error:
oserror:%20/home/… lib/python3.10/site-packages/torch_cluster/_version_cuda…so: undefined symbol: _ZN3c1017RegisterOperatorsD1Ev
When I uninstall torch-cluster, it works for a bit longer but stops when the code needs it.
Would you please help me with that?